🔒️ Add zizmor and fix audit findings (#2260)

Co-authored-by: github-actions[bot] <github-actions[bot]@users.noreply.github.com>

.github/workflows/pre-commit.yml

@@ -6,6 +6,8 @@ on:
       - opened
       - synchronize
 
+permissions: {}
+
 env:
   # Forks and Dependabot don't have access to secrets
   HAS_SECRETS: ${{ secrets.PRE_COMMIT != '' }}
@@ -13,6 +15,7 @@ env:
 jobs:
   pre-commit:
     runs-on: ubuntu-latest
+    timeout-minutes: 5
     steps:
       - name: Dump GitHub context
         env:
@@ -28,7 +31,8 @@ jobs:
           # And it needs the full history to be able to compute diffs
           fetch-depth: 0
           # A token other than the default GITHUB_TOKEN is needed to be able to trigger CI
-          token: ${{ secrets.PRE_COMMIT }}
+          token: ${{ secrets.PRE_COMMIT }} # zizmor: ignore[secrets-outside-env]
+          persist-credentials: true # Required for `git push` command
       # pre-commit lite ci needs the default checkout configs to work
       - uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
         name: Checkout PR for fork
@@ -37,14 +41,20 @@ jobs:
         # To be able to commit it needs the head branch of the PR, the remote one
           ref: ${{ github.event.pull_request.head.sha }}
           fetch-depth: 0
-      - uses: oven-sh/setup-bun@v2
+          persist-credentials: false
+      - uses: oven-sh/setup-bun@0c5077e51419868618aeaa5fe8019c62421857d6 # v2.2.0
+        with:
+          bun-version: 1.3.12
       - name: Set up Python
         uses: actions/setup-python@a309ff8b426b58ec0e2a45f0f869d46889d02405 # v6.2.0
         with:
           python-version: "3.11"
       - name: Setup uv
-        uses: astral-sh/setup-uv@37802adc94f370d6bfd71619e3f0bf239e1f3b78 # v7.6.0
+        uses: astral-sh/setup-uv@08807647e7069bb48b6ef5acd8ec9567f424441b # v8.1.0
         with:
+          # Before upgrading uv version, make sure astral-sh/setup-uv knows its checksum.
+          # See: https://github.com/astral-sh/setup-uv/issues/851#issuecomment-4282017837
+          version: "0.11.4"
           cache-dependency-glob: |
             requirements**.txt
             pyproject.toml
@@ -55,7 +65,7 @@ jobs:
         run: bun ci
       - name: Run prek - pre-commit
         id: precommit
-        run: uvx prek run --from-ref origin/${GITHUB_BASE_REF} --to-ref HEAD --show-diff-on-failure
+        run: uv run prek run --from-ref origin/${GITHUB_BASE_REF} --to-ref HEAD --show-diff-on-failure
         continue-on-error: true
       - name: Commit and push changes
         if: env.HAS_SECRETS == 'true'
@@ -83,6 +93,7 @@ jobs:
     needs:
       - pre-commit
     runs-on: ubuntu-latest
+    timeout-minutes: 5
     steps:
       - name: Dump GitHub context
         env: